Vertical slice

Auditory Clicks Evidence Accumulation

Brody Lab Poisson clicks slice with real local batch processing, per-rat psychometrics, and aggregate click-time evidence kernel.

Run in your browser

Auditory Clicks · per-rat batch summary

Inspect the cross-rat aggregate batch summary. This slice is an aggregate across multiple Brody Lab rats, so the CSV is one row per rat (not per trial). Trial-level data lives in per-rat subdirectories that are not bundled into the public deploy.

Pyodide + scipy run locally; first load downloads ~12 MB.

Auditory Clicks · per-rat batch summary

Pyodide 0.26.4

Inspect the cross-rat aggregate batch summary. This slice is an aggregate across multiple Brody Lab rats, so the CSV is one row per rat (not per trial). Trial-level data lives in per-rat subdirectories that are not bundled into the public deploy.

Python (df is a pandas DataFrame loaded from the trials CSV; ⌘/Ctrl-Enter to run)
Click run to start

Runs entirely in your browser. First click downloads ~10 MB of Pyodide and pandas; subsequent runs reuse the cached runtime.

Findings extracted

Curves attached to this slice, on shared signed-evidence axes.

Metrics

Rats 5
Trials 61,222
Psychometric rows 44
Kernel bins 10

Slice profile

Operational variables for cross-slice comparison.

Species
rat
Modality
auditory
Stimulus metric
signed click-count difference
Evidence type
pulse-train
Choice type
2afc
Response modality
nose-poke
Source data level
processed-trial
Analysis outputs
psychometric bias, click-time evidence kernel
Data scope
local batch of extracted rat `.mat` files
Canonical axis
right-minus-left click count

Reproduce locally

Copy this recipe to rebuild the slice's artifacts on your machine at the exact commit deployed here.

Reproduce locally

Run the slice pipeline at this commit

git clone https://github.com/aeronjl/behavtaskatlas.git
cd behavtaskatlas
git checkout ec14ee5
uv sync --extra clicks
uv run behavtaskatlas auditory-clicks-download
uv run behavtaskatlas auditory-clicks-harmonize
uv run behavtaskatlas auditory-clicks-analyze
uv run behavtaskatlas auditory-clicks-report

Extras group clicks pulls in the analysis dependencies for this family. Recipe pinned to commit ec14ee5 so a teammate runs the same code path the deploy used.

Artifacts

Slice has a generated local report; the analysis pipeline ran cleanly and produced trial-level output, plots, and provenance.