Papers

18 curated papers in the generated bibliography; 91 standardized findings are extracted from the subset with curve-level coverage. Click into a card for provenance, linked records, and any per-paper finding table, or compare on shared axes via /findings.

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Showing 18 of 18 papers · 91 findings · 222 model fits · 14 slices · 824,345 trials · 14 protocols

13 source-linked papers

The International Brain Laboratory et al. A brain-wide map of neural activity during complex behaviour. Nature 645:177-191, 2025.

paper.ibl-2025-brainwide-map
2025

Findings extracted International Brain Laboratory mouse

Coverage Findings extracted

Findings 1 Models 2 Slices 1
Curves 1

Source 1

Findings

1

Trials

6,018

Subjects

139

Curves

psychometric
Protocols
- IBL visual decision task
Source levels

processed trials
Slices
- IBL Brainwide Map Behavior
Details doi:10.1038/s41586-025-09235-0 BibTeX RIS
The International Brain Laboratory et al. Brain-wide representations of prior information in mouse decision-making. Nature 645:192-200, 2025.

paper.ibl-2025-prior-map
2025

Findings extracted International Brain Laboratory mouse

Coverage Findings extracted

Findings 3 Models 6 Slices 1
Curves 1

Source 1

Findings

3

Trials

6,018

Subjects

5

Curves

psychometric
Protocols
- IBL visual decision task
Source levels

processed trials
Slices
- IBL Brainwide Map Behavior
Details doi:10.1038/s41586-025-09226-1 BibTeX RIS
Fritsche M, Majumdar A, Strickland L, Liebana Garcia S, Bogacz R, Lak A. Temporal regularities shape perceptual decisions and striatal dopamine signals. Nature Communications 15:7093, 2024.

paper.fritsche-2024-temporal-regularities
2024

Findings extracted mouse

Coverage Findings extracted

Findings 3 Models 6 Slices 1
Curves 1

Source 1

Findings

3

Trials

268,267

Subjects

-

Curves

psychometric
Protocols
- Mouse visual contrast wheel task with temporal regularities
Source levels

processed trials
Slices
- Fritsche Temporal Regularities
Details doi:10.1038/s41467-024-51393-8 BibTeX RIS
Walsh K, McGovern DP, Dully J, Kelly SP, O'Connell RG. Prior probability cues bias sensory encoding with increasing task exposure. eLife 12:RP91135, 2024.

paper.walsh-2024-prior-cue
2024

Findings extracted human

Coverage Findings extracted

Findings 42 Models 93 Slices 1
Curves 2

Source 1

Findings

42

Trials

198,600

Subjects

12

Curves

chronometric, psychometric
Protocols
- Human visual contrast 2AFC keyboard task
Source levels

processed trials
Slices
- Human Visual Contrast Prior Cue
Details doi:10.7554/eLife.91135.3 BibTeX RIS
Garrett ME et al. Stimulus novelty uncovers coding diversity in visual cortical circuits. bioRxiv, 2023.

paper.garrett-2023-visual-behavior
2023

Findings extracted Allen Institute MindScope mouse

Coverage Findings extracted

Findings 2 Models 4 Slices 1
Curves 1

Source 1

Findings

2

Trials

506

Subjects

1

Curves

hit rate by condition
Protocols
- Allen Visual Behavior change detection
Source levels

raw trials
Slices
- Allen Visual Behavior Change Detection
Details doi:10.1101/2023.02.14.528085 BibTeX RIS
Khalvati K, Kiani R, Rao RPN. Bayesian inference with incomplete knowledge explains perceptual confidence and its deviations from accuracy. Nature Communications, 2021.

paper.khalvati-kiani-rao-2021
2021

Findings extracted Rao NHP

Coverage Findings extracted

Findings 8 Models 18 Slices 1
Curves 3

Source 1

Findings

8

Trials

225,712

Subjects

2

Curves

accuracy by strength, chronometric, psychometric
Protocols
- Macaque random-dot motion confidence wagering task
Source levels

figure source data
Slices
- Macaque RDM Confidence Wagering
Details doi:10.1038/s41467-021-25419-4 BibTeX RIS
The International Brain Laboratory et al. Standardized and reproducible measurement of decision-making in mice. eLife, 2021, 10:e63711.

paper.ibl-2021-standardized
2021

Findings extracted International Brain Laboratory mouse

Coverage Findings extracted

Findings 3 Models 6 Slices 2
Curves 1

Source 1

Findings

3

Trials

537

Subjects

140

Curves

psychometric
Protocols
- IBL visual decision task
- Mouse unbiased visual contrast wheel task
Source levels

processed trials
Slices
- IBL Visual Decision
- Mouse Visual Contrast Training
Details doi:10.7554/eLife.63711 BibTeX RIS
Zatka-Haas P, Steinmetz NA, Carandini M, Harris KD. Sensory coding and the causal impact of mouse cortex in a visual decision. eLife 10:e63163, 2021.

paper.zatka-haas-2021-sensory-coding-causal-impact
2021

Findings extracted Carandini/Harris collaboration mouse

Coverage Findings extracted

Findings 1 Models 2 Slices 1
Curves 1

Source 1

Findings

1

Trials

7,547

Subjects

-

Curves

psychometric
Protocols
- Mouse unforced visual contrast wheel task
Source levels

processed trials
Slices
- Zatka-Haas Visual Decision
Details doi:10.7554/eLife.63163 BibTeX RIS
Lak A, Hueske E, Hirokawa J, Masset P, Ott T, Urai AE, Donner TH, Carandini M, Tonegawa S, Uchida N, Kepecs A. Reinforcement biases subsequent perceptual decisions when confidence is low, a widespread behavioral phenomenon. eLife 9:e49834, 2020.

paper.lak-2020-reinforcement-biases-confidence
2020

Protocol curated mousehuman

Coverage Protocol curated

Findings 0 Models 0 Slices 0
Curves 0

Source 0

Findings

0

Trials

0

Subjects

-

Curves

-
Protocols
- Mouse unbiased visual contrast wheel task
Source levels

-

Slices

-
Details doi:10.7554/eLife.49834 BibTeX RIS
Lak A, Okun M, Moss MM, Gurnani H, Farrell K, Wells MJ, Bai Reddy C, Kepecs A, Harris KD, Carandini M. Dopaminergic and prefrontal basis of learning from sensory confidence and reward value. Neuron 105:700-711, 2020.

paper.lak-2020-dopaminergic-prefrontal
2020

Protocol curated Carandini/Harris/Kepecs collaboration mouse

Coverage Protocol curated

Findings 0 Models 0 Slices 0
Curves 0

Source 0

Findings

0

Trials

0

Subjects

-

Curves

-
Protocols
- Mouse visual contrast wheel task with reward-value blocks
Source levels

-

Slices

-
Details doi:10.1016/j.neuron.2019.11.018 BibTeX RIS
Steinmetz NA, Zatka-Haas P, Carandini M, Harris KD. Distributed coding of choice, action and engagement across the mouse brain. Nature 576:266-273, 2019.

paper.steinmetz-2019-distributed-coding
2019

Findings extracted Carandini/Harris collaboration mouse

Coverage Findings extracted

Findings 1 Models 2 Slices 1
Curves 1

Source 1

Findings

1

Trials

6,745

Subjects

-

Curves

psychometric
Protocols
- Mouse unforced visual contrast wheel task
Source levels

processed trials
Slices
- Steinmetz Visual Decision
Details doi:10.1038/s41586-019-1787-x BibTeX RIS
London D. Poisson Clicks Task, DBS OFF/ON. Mendeley Data, V1, 2018.

paper.london-2018-poisson-clicks-dbs
2018

Findings extracted human

Coverage Findings extracted

Findings 2 Models 4 Slices 1
Curves 1

Source 1

Findings

2

Trials

5,085

Subjects

-

Curves

psychometric
Protocols
- Human auditory clicks button task
Source levels

raw trials
Slices
- Human Auditory Clicks DBS
Details doi:10.17632/3j86m7mjx2.1 BibTeX RIS
Pho GN, Goard MJ, Woodson J, Crawford B, Sur M. Task-dependent representations of stimulus and choice in mouse parietal cortex. Nature Communications 9:2596, 2018.

paper.pho-2018-task-dependent-parietal
2018

Protocol curated Sur lab mouse

Coverage Protocol curated

Findings 0 Models 0 Slices 0
Curves 0

Source 0

Findings

0

Trials

0

Subjects

15

Curves

-
Protocols
- Mouse visual contrast lick go/no-go task
Source levels

-

Slices

-
Details doi:10.1038/s41467-018-05012-y BibTeX RIS
Burgess CP, Lak A, Steinmetz NA, Zatka-Haas P, Bai Reddy C, Jacobs EAK, Linden JF, Paton JJ, Ranson A, Schroder S, Soares S, Wells MJ, Wool LE, Harris KD, Carandini M. High-Yield Methods for Accurate Two-Alternative Visual Psychophysics in Head-Fixed Mice. Cell Reports 20:2513-2524, 2017.

paper.burgess-2017-high-yield-visual-psychophysics
2017

Protocol curated Carandini/Harris collaboration mouse

Coverage Protocol curated

Findings 0 Models 0 Slices 0
Curves 0

Source 0

Findings

0

Trials

0

Subjects

-

Curves

-
Protocols
- Mouse unforced visual contrast wheel task
- Mouse unbiased visual contrast wheel task
Source levels

-

Slices

-
Details doi:10.1016/j.celrep.2017.08.047 BibTeX RIS
Brunton BW, Botvinick MM, Brody CD. Rats and humans can optimally accumulate evidence for decision-making. Science, 2013, 340(6128):95-98.

paper.brunton-2013-rats-humans
2013

Findings extracted Brody rat

Coverage Findings extracted

Findings 5 Models 25 Slices 1
Curves 1

Source 1

Findings

5

Trials

61,222

Subjects

5

Curves

psychometric
Protocols
- Rat auditory clicks nose-poke task
Source levels

processed trials
Slices
- Auditory Clicks Evidence Accumulation
Details doi:10.1126/science.1233912 BibTeX RIS
Busse L, Ayaz A, Dhruv NT, Katzner S, Saleem AB, Scholvinck ML, Zaharia AD, Carandini M. The detection of visual contrast in the behaving mouse. Journal of Neuroscience 31:11351-11361, 2011.

paper.busse-2011-detection-visual-contrast
2011

Protocol curated Carandini lab mouse

Coverage Protocol curated

Findings 0 Models 0 Slices 0
Curves 0

Source 0

Findings

0

Trials

0

Subjects

12

Curves

-
Protocols
- Mouse port-based visual contrast 2AFC task
Source levels

-

Slices

-
Details doi:10.1523/JNEUROSCI.6689-10.2011 BibTeX RIS
Palmer J, Huk AC, Shadlen MN. The effect of stimulus strength on the speed and accuracy of a perceptual decision. Journal of Vision, 2005, 5(5):376-404.

paper.palmer-huk-shadlen-2005
2005

Findings extracted Shadlen human

Coverage Findings extracted

Findings 14 Models 37 Slices 1
Curves 2

Source 1

Findings

14

Trials

13,492

Subjects

6

Curves

chronometric, psychometric
Protocols
- Human random-dot motion button reaction-time task
Source levels

processed trials
Slices
- Human Random-Dot Motion
Details doi:10.1167/5.5.1 BibTeX RIS
Roitman JD, Shadlen MN. Response of neurons in the lateral intraparietal area during a combined visual discrimination reaction time task. Journal of Neuroscience, 2002, 22(21):9475-9489.

paper.roitman-shadlen-2002
2002

Findings extracted Shadlen NHP

Coverage Findings extracted

Findings 6 Models 17 Slices 1
Curves 2

Source 1

Findings

6

Trials

24,596

Subjects

2

Curves

chronometric, psychometric
Protocols
- Classic macaque random-dot motion discrimination
Source levels

processed trials
Slices
- Random-Dot Motion
Details doi:10.1523/JNEUROSCI.22-21-09475.2002 BibTeX RIS