uv run behavtaskatlas fritsche-temporal-regularities-report
to generate full artifacts.
Vertical slice
Fritsche Temporal Regularities
Behavior-first slice for the Fritsche et al. mouse visual decision dataset. The adapter reads generated Figshare behavior CSVs, harmonizes wheel choices and contrast levels, and preserves Neutral, Repeating, and Alternating stimulus-side sequence environments as explicit task variables.
Findings extracted
Curves attached to this slice, on shared signed-evidence axes.
Metrics
Trials 269,168
Response trials 268,267
No-response trials 901
Prior contexts 3
Summary rows 35
Slice profile
Operational variables for cross-slice comparison.
- Species
- mouse
- Modality
- visual
- Stimulus metric
- signed contrast
- Evidence type
- static
- Choice type
- 2afc
- Response modality
- wheel
- Source data level
- processed-trial
- Analysis outputs
- psychometric summary by signed contrast and sequence environment, lag-1 stimulus-transition and choice-history summaries, subject-environment replication table, logistic choice-history coefficients, neutral-session adaptation summaries, source code manifest, artifact provenance table, canonical trial table, SVG, and static report
- Data scope
- generated behavior CSVs from Figshare data.zip
- Canonical axis
- right contrast minus left contrast
Reproduce locally
Copy this recipe to rebuild the slice's artifacts on your machine at the exact commit deployed here.
Reproduce locally
Run the slice pipeline at this commit
git clone https://github.com/aeronjl/behavtaskatlas.git cd behavtaskatlas git checkout ec14ee5 uv sync uv run behavtaskatlas fritsche-temporal-regularities-download uv run behavtaskatlas fritsche-temporal-regularities-harmonize uv run behavtaskatlas fritsche-temporal-regularities-analyze uv run behavtaskatlas fritsche-temporal-regularities-report
No --extra group inferred — see the repository README for the right extras
flag if the slice has analysis-only deps. Recipe pinned to commit ec14ee5 so a teammate runs the same code path the deploy used.
Artifacts
- Report HTML fritsche_temporal_regularities/fritsche-temporal-regularities/report.html
- Analysis result JSON fritsche_temporal_regularities/fritsche-temporal-regularities/analysis_result.json
- Psychometric SVG fritsche_temporal_regularities/fritsche-temporal-regularities/psychometric.svg
- Psychometric summary CSV fritsche_temporal_regularities/fritsche-temporal-regularities/psychometric_summary.csv
- Transition summary CSV fritsche_temporal_regularities/fritsche-temporal-regularities/transition_summary.csv
- Choice-history summary CSV fritsche_temporal_regularities/fritsche-temporal-regularities/choice_history_summary.csv
- Subject-environment summary CSV fritsche_temporal_regularities/fritsche-temporal-regularities/subject_environment_summary.csv
- Choice-history model coefficients CSV fritsche_temporal_regularities/fritsche-temporal-regularities/choice_history_model_coefficients.csv
- Neutral adaptation summary CSV fritsche_temporal_regularities/fritsche-temporal-regularities/neutral_adaptation_summary.csv
- Neutral adaptation session CSV fritsche_temporal_regularities/fritsche-temporal-regularities/neutral_adaptation_session_summary.csv
- Canonical trials CSV fritsche_temporal_regularities/fritsche-temporal-regularities/trials.csv
- Harmonization summary CSV fritsche_temporal_regularities/fritsche-temporal-regularities/summary.csv
- Provenance JSON fritsche_temporal_regularities/fritsche-temporal-regularities/provenance.json
- Code manifest JSON fritsche_temporal_regularities/fritsche-temporal-regularities/code_manifest.json
- Artifact provenance CSV fritsche_temporal_regularities/fritsche-temporal-regularities/artifact_provenance.csv
- Slice notes ../vertical_slices/fritsche_temporal_regularities/README.md
- Source field mapping ../vertical_slices/fritsche_temporal_regularities/source_fields.yaml
- Analysis record ../analyses/fritsche_temporal_regularities.yaml